Package: MIMER 1.0.3
MIMER: Data Wrangling for Antimicrobial Resistance Studies
Designed for analyzing the Medical Information Mart for Intensive Care(MIMIC) dataset, a repository of freely accessible electronic health records. MIMER(MIMIC-enabled Research) package, offers a suite of data wrangling functions tailored specifically for preparing the dataset for research purposes, particularly in antimicrobial resistance(AMR) studies. It simplifies complex data manipulation tasks, allowing researchers to focus on their primary inquiries without being bogged down by wrangling complexities.
Authors:
MIMER_1.0.3.tar.gz
MIMER_1.0.3.zip(r-4.5)MIMER_1.0.3.zip(r-4.4)MIMER_1.0.3.zip(r-4.3)
MIMER_1.0.3.tgz(r-4.4-any)MIMER_1.0.3.tgz(r-4.3-any)
MIMER_1.0.3.tar.gz(r-4.5-noble)MIMER_1.0.3.tar.gz(r-4.4-noble)
MIMER_1.0.3.tgz(r-4.4-emscripten)MIMER_1.0.3.tgz(r-4.3-emscripten)
MIMER.pdf |MIMER.html✨
MIMER/json (API)
NEWS
| # Install 'MIMER' in R: |
| install.packages('MIMER', repos = c('https://anoopvelluv.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 months agofrom:3c9fd62eed. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 15 2024 |
| R-4.5-win | OK | Sep 15 2024 |
| R-4.5-linux | OK | Sep 15 2024 |
| R-4.4-win | OK | Sep 15 2024 |
| R-4.4-mac | OK | Sep 15 2024 |
| R-4.3-win | OK | Sep 15 2024 |
| R-4.3-mac | OK | Sep 15 2024 |
Exports:check_previous_eventsclean_antibioticscleanse_urine_organism_namesis_systemic_routendc_is_antimicrobialndc_to_antimicrobialtranspose_microbioevents
Dependencies:AMRbriocallrclicpp11crayondata.tabledescdiffobjdigestdplyrevaluatefansifsfuzzyjoingenericsgeospheregluejsonlitelatticelifecyclemagrittrpillarpkgbuildpkgconfigpkgloadplyrpraiseprocessxpspurrrR6Rcpprematch2reshape2rlangrprojrootspstringdiststringistringrtestthattibbletidyrtidyselectutf8vctrswaldowithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add a column and check any previous events identified for a particular antibiotic | add_events check_previous_events |
| Clean Antibiotics using Fuzzy Matching with AMR Packages's Antibiotics Data. | clean_antibiotics |
| Cleanse organism names in Urine samples | cleanse_urine_organism_names |
| Convert All Directory Files to CSV - To be used in the Manual Build Process | convert_all_directory_files_as_csv |
| Download and Convert NDC Files to CSV - To be used in the Manual Build Process | download_ndc_files_as_csv |
| Check 'route' is systemic or not | is_systemic_route |
| Check 'ndc' code is belongs to any Antimicrobial. | ndc_is_antimicrobial |
| Convert 'ndc' code to corresponding Antibiotic code. | ndc_to_antimicrobial |
| Remove Files - To be used in the Manual Build Process | remove_files |
| Transpose microbiology events dataset | duplicated_microbioevents_records transpose_microbioevents |
